Getting started with Verily Workbench
Getting started with Verily Workbench (web UI).
Tag: workbench-cli
Installing and running the Workbench CLI
Getting started with installing and running the Workbench CLI.
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Basic usage
Examples of typical operations performed via the Verily Workbench CLI.
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Command Line Interface
Purpose and capabilities of the Workbench Command Line Interface
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Installing and running the Workbench CLI
Getting started with installing and running the Workbench CLI.
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Nextflow
Examples related to running Nextflow workflows via the Workbench CLI.
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Using the Workbench CLI
How to use the Workbench CLI tool.
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Workbench CLI commands
Detailed explanations about the Workbench CLI commands and their options.
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Using git repos in Verily Workbench notebooks with the Workbench CLI
How to set up and use git repos from your Verily Workbench notebook environment with the Workbench CLI.
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The Workbench CLI and workspace context
Setting and working within workspaces via the Workbench CLI.
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Command Line Usage Examples
Examples for using the Workbench CLI in specific contexts.
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Git repositories in notebooks
Examples related to using Git repositories in your notebook environments with the Workbench CLI.
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Workflows in Verily Workbench: : Cromwell, dsub, and Nextflow
Workflows in Verily Workbench: Cromwell, dsub, and Nextflow
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Working with workspace context environment variables
Using the workspace context environment variables via the Workbench CLI.
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Using the Workbench CLI from a container
Building a custom container and using it to run Workbench CLI commands