Basic usage
Examples of typical operations performed via the Verily Workbench CLI.
Category: Technical Reference
Cloud environment operations
Operations that can be performed on cloud environments through the Verily Workebench web UI.
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Command Line Interface
Purpose and capabilities of the Workbench Command Line Interface
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Compute profile configuration options
Options for configuring the compute profile of a cloud environment.
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Creating and managing user groups
How to create and manage Verily Workbench groups
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Data Resource operations
Operations that can be performed on data resources through the Verily Workbench web UI.
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Git integrations with cloud environments
Working with Git and GitHub.
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Installing and running the Workbench CLI
Getting started with installing and running the Workbench CLI.
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Nextflow
Examples related to running Nextflow workflows via the Workbench CLI.
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Workspaces
What are Workspaces and how do you use them?
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Workbench CLI commands
Detailed explanations about the Workbench CLI commands and their options.
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Cloud Basics
Key concepts to get you acquainted with cloud infrastructure
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Creating data collections
How to create Verily Workbench data collections
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Data collections
Detailed information about data collections and instructions for creating and managing them.
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Command Line Usage Examples
Examples for using the Workbench CLI in specific contexts.
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Git repositories in notebooks
Examples related to using Git repositories in your notebook environments with the Workbench CLI.
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Registering a service account
Instructions for registering a service account to run automated processes
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Technical Reference
Technical reference for Verily Workbench features and capabilities.
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Working with workspace context environment variables
Using the workspace context environment variables via the Workbench CLI.
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Using the Workbench CLI from a container
Building a custom container and using it to run Workbench CLI commands
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Access control and sharing
Considerations around sharing workspaces with collaborators and managing access to resources.
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Workspace operations (web UI)
Operations that can be applied to workspaces through the web UI.