Basic usage
Examples of typical operations performed via the Verily Workbench CLI.
Category: Technical Reference
Cloud environment operations
Operations that can be performed on cloud environments through the Verily Workbench web UI
Categories:
Compute profile configuration options
Options for configuring the compute profile of a cloud environment
Categories:
Create custom applications
Creating custom applications in Verily Workbench
Categories:
Creating and managing user groups
How to create and manage Verily Workbench groups
Categories:
Data resource operations
Operations that can be performed on data resources through the Verily Workbench web UI
Categories:
Git integrations with cloud environments
Working with Git and GitHub
Categories:
Installing and running the Workbench CLI
Getting started with installing and running the Workbench CLI
Categories:
Nextflow
Examples related to running Nextflow workflows via the Workbench CLI.
Categories:
Workbench CLI commands
Detailed explanations about the Workbench CLI commands and their options
Categories:
Setting up pods and billing in Verily Workbench
Associating your Workbench user profile with cloud billing and creating a pod
Categories:
Managing organizations and users
Managing organizations and users in Workbench
Categories:
Creating a data collection with the Workbench CLI
How to create and manage a data collection via the Workbench CLI
Categories:
Command Line Usage Examples
Examples for using the Workbench CLI in specific contexts.
Categories:
Git repositories in notebooks
Examples related to using Git repositories in your notebook environments with the Workbench CLI
Categories:
Registering a service account
Instructions for registering a service account to run automated processes
Categories:
Technical Reference
Technical reference for Verily Workbench features and capabilities.
Categories:
Using non-Google identities
How to use Workbench with a non-Google identity provider
Categories:
Using the Cromwell engine to run WDL workflows
Using the Cromwell engine to run WDL workflows on Verily Workbench
Categories:
Working with workspace context environment variables
Using the workspace context environment variables via the Workbench CLI
Categories:
Using the Workbench CLI from a container
Building a custom container and using it to run Workbench CLI commands
Categories:
Architecture Overview
Overview of the software architecture
Categories:
Cloud Basics
Key concepts to get you acquainted with cloud infrastructure
Categories:
Workspaces
What are Workspaces and how do you use them?
Categories:
Data Collections in Workbench
How to create and manage a data collection via the Workbench UI
Categories:
Command Line Interface
Purpose and capabilities of the Workbench Command Line Interface
Categories:
Workflows
What are Workflows, and how do you run them?
Categories:
Perimeter policy
Understanding and setting up workspace perimeter policies
Categories:
Access control and sharing
Considerations around sharing workspaces with collaborators and managing access to resources.
Categories:
Workspace operations (web UI)
Operations that can be applied to workspaces through the web UI.